data module

data module#

This package provides some access to some sample data to run. Right now, you can use it to quickly access the BEELINE single cell benchmark and the two microglia datasets we used in the RegDiffusion paper.

regdiffusion.data.load_beeline([data_dir, ...])

Load BEELINE data and its ground truth (download if necessary).

regdiffusion.data.load_atlas_microglia([...])

Load single cell for microglia from Broad Institute SCP795

regdiffusion.data.load_hammond_microglia([...])

Load single cell for microglia from Hammond Microglia dataset